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Form 990 instructions for exempt organizations, part by part

Form 990 is the IRS form tax-exempt organizations, nonexempt charitable trusts and section 527 political organizations use to file their annual information return. For 2025, an organization with gross receipts of $200,000 or more, or total assets of $500,000 or more, files Form 990 instead of Form 990-EZ.

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“Tax-exempt organizations, nonexempt charitable trusts, and section 527 political organizations file Form 990 to provide the IRS with the information required by section 6033.” IRS, About Form 990

Which organizations file Form 990, 990-EZ or 990-N?

An organization exempt under section 501(a) files Form 990 when its gross receipts are $200,000 or more or its total assets are $500,000 or more at the end of the tax year, according to the 2025 Instructions for Form 990. Smaller organizations can file Form 990-EZ or submit the Form 990-N e-Postcard.

ReturnWho can use itTest
Form 990-NOrganizations whose gross receipts are normally $50,000 or less3-year average for organizations at least 3 years old
Form 990-EZGross receipts under $200,000 and end-of-year total assets under $500,000Current tax year
Form 990Gross receipts of $200,000 or more, or total assets of $500,000 or moreCurrent tax year
Form 990-PFPrivate foundations, whatever their sizeClassification

Some organizations must file Form 990 at any size. The Instructions for Form 990-EZ list sponsoring organizations of donor advised funds, organizations operating a hospital facility, section 501(c)(29) health insurance issuers and certain section 512(b)(13) controlling organizations, and a group return always goes on Form 990. A section 509(a)(3) supporting organization files Form 990 or 990-EZ even when its gross receipts are normally $50,000 or less, with narrow exceptions.

Form 990 is due by the 15th day of the 5th month after year end, May 15 for a calendar-year filer. An organization that doesn't file or submit a notice for 3 consecutive years loses its exemption automatically.

Where does each source document go on Form 990?

Each source document an exempt organization keeps feeds a specific part of Form 990, and Part I is a summary built from the later parts. The 2025 form has twelve parts: the summary and signature in Parts I and II, program accomplishments in Part III, the schedule checklist in Part IV, other filings in Part V, governance in Part VI, compensation in Part VII, revenue, expenses and the balance sheet in Parts VIII to X, and the net asset reconciliation and financial statement questions in Parts XI and XII.

Source documentWhat it supportsForm 990 line
Donor receipts and pledge recordsContributions and grantsPart VIII, 1a to 1h; Schedule B
Form W-2 box 5, Form 1099-NEC box 1Reportable compensation of officers and key employeesPart VII, Section A, column (D)
Form W-3Number of employeesPart V, 2a
Form 1096, box 3Number of information returns filedPart V, 1a
Form 990-TNet unrelated business taxable incomePart I, 7b
Grant payment recordsGrants to organizations and individualsPart IX, 1 to 3
Audited or reviewed financial statementsBalance sheet and net assetsPart X; Part XI; Part XII, 2a and 2b

Part VII uses reportable compensation from box 5 of Form W-2, box 6 of Form 1099-MISC and box 1 of Form 1099-NEC, per the Part VII instructions printed on the form. Part VIII, column (A) has to equal the sum of columns (B) to (D) plus the contributions on line 1h.

Which schedules does Form 990 Part IV require?

Form 990 Part IV is the checklist of required schedules, and each "Yes" answer points to a schedule that has to be attached. Every Form 990 filer completes Schedule O, which line 38 confirms. The answers depend on this year's activity and balances, so the checklist is answered from the current books rather than copied from last year's return.

Part IV lineTriggerSchedule
1Section 501(c)(3) or 4947(a)(1) organization, other than a private foundationSchedule A
2Meets the Schedule B General Rule or a Special RuleSchedule B
3 to 5Political campaign activity, lobbying, or section 6033(e) duesSchedule C
6 to 12aDonor advised funds, easements, collections, endowments, certain balance sheet items, audited statementsSchedule D
14b to 16Foreign activities over $10,000, or foreign grants over $5,000Schedule F
17 to 19More than $15,000 of professional fundraising, event income or gaming incomeSchedule G
21 and 22More than $5,000 of domestic grants to organizations or individualsSchedule I
23"Yes" on Part VII, Section A, line 3, 4 or 5Schedule J
25a to 28cExcess benefit transactions, loans, grants or business deals with interested personsSchedule L
29 and 30More than $25,000 of noncash contributions, or art and conservation giftsSchedule M
33 to 37Disregarded entities, related organizations, controlled entitiesSchedule R

Part IV, line 2 is answered "No" when the organization isn't covered by the General Rule or a Special Rule, and the Instructions for Schedule B treat that answer as the certification that Schedule B isn't required. A school described in section 170(b)(1)(A)(ii) answers line 13 and files Schedule E, and a hospital facility operator answers line 20a and files Schedule H.

What does a Form 990 tie-out look like?

For example, a section 501(c)(3) public charity reports $850,000 of contributions, $120,000 of program service revenue and $15,000 of investment income for 2025, with no costs netted against revenue. Expenses are $930,000, and an $18,000 unrealized investment gain is booked to net assets. Gross receipts are $985,000, so the organization files Form 990 rather than Form 990-EZ.

Tie-outForm 990 lineAmount
Contributions and grantsPart VIII 1h = Part I 8$850,000
Total revenuePart VIII 12 = Part I 12$985,000
Total functional expensesPart IX 25 = Part I 18$930,000
Fundraising expenses, column (D)Part IX 25(D) = Part I 16b$80,000
Revenue less expensesPart I 19 = Part XI 3$55,000
Beginning net assetsPart XI 4 = Part X 32(A)$1,200,000
Net unrealized gainsPart XI 5$18,000
Ending net assetsPart XI 10 = Part X 32(B)$1,273,000

Program service expenses in Part IX, column (B) are $720,000 and management and general in column (C) are $130,000, so columns (B) to (D) add back to the $930,000 in column (A). If the charity claims the Schedule B Special Rule for organizations meeting the 33 1/3% support test, only contributors who gave more than the greater of $5,000 or 2% of the $850,000 on line 1h, which is $17,000, are listed on Schedule B. Every equality in this table comes from a "must equal" instruction printed on the 2025 Form 990.

What do reviewers check on Form 990?

A reviewer checking Form 990 confirms that Part I agrees with the detailed parts, that net assets reconcile to the balance sheet, and that Part IV picked up every required schedule. The audited or reviewed financial statements and the prior-year Form 990 are the first documents to pull, because Part X, column (A) and Part XI, line 4 both carry forward from last year. The six checks below come from the 2025 form and instructions.

Part I ties to Parts VIII to X
Part I, line 12 equals Part VIII, line 12, line 18 equals Part IX, line 25, and lines 20 and 21 match Part X, lines 16 and 26.
Form 990, Part I
Net assets reconcile
Part XI, line 4 equals Part X, line 32, column (A), and line 10 equals column (B).
Form 990, Part XI
Schedule B matches Part IV, line 2
A "Yes" on line 2 has Schedule B attached, and a "No" means no contributor met a filing rule.
Instructions for Schedule B
Functional columns are complete
Section 501(c)(3) and 501(c)(4) organizations complete Part IX, columns (A) through (D).
Instructions, Part IX
Audit answers drive Schedule D
"Yes" on Part IV, line 12a means Schedule D, Parts XI and XII are attached.
Form 990, Part IV, line 12a
Schedule O is attached
Every filer completes Schedule O, including the Part VI, lines 11b and 19 narratives.
Instructions, Part IV, line 38

The reviewer also checks that no social security numbers appear anywhere on the return or its schedules, since Form 990 is open to public inspection and, with limited exceptions, neither the organization nor the IRS can remove them. Before signing, the reviewer confirms Part VI, line 11a: whether a complete copy of the Form 990 went to every governing body member before filing, with the review process described on Schedule O under line 11b.

Every line checked against the documents the client sent

Filed reads the organization's financial statements, donor records, payroll forms and prior-year return, then checks every part of Form 990 against them. Anything that doesn't tie comes back as a review item with a citation to the source.

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Example review item
Ending net assets don't match the balance sheet

Part XI, line 10 shows $1,273,000, but Part X, line 32, column (B) shows $1,255,000. Confirm whether the $18,000 unrealized gain on Part XI, line 5 was recorded in the balance sheet investments.

Source: 2025 return, Form 990, Part XI, line 10

Common questions

What counts as gross receipts for the Form 990 filing test?

Gross receipts for the Form 990 filing test are the total amounts received from all sources during the tax year, without subtracting costs or expenses. On Form 990, the instructions add Part VIII, lines 6b, 7b, 8b, 9b and 10b back to total revenue on line 12. That is why total revenue can understate gross receipts.

Can a small organization choose to file Form 990 instead of 990-EZ?

A small organization can choose to file Form 990 even when it qualifies for Form 990-EZ or Form 990-N. The 2025 Instructions for Form 990 say an organization that makes this choice must file a complete return, including every schedule Part IV requires, not a partial Form 990.

What happens if an exempt organization stops filing Form 990?

An exempt organization that fails to file a required Form 990, 990-EZ or 990-N for 3 consecutive years automatically loses its tax-exempt status on the due date of the third return. The organization may then need to file income tax returns, and it can apply for reinstatement, per the 2025 Instructions for Form 990.

Camron Momeni, CPA
About the author
Camron Momeni, CPA
VP of Tax Experience

Camron Momeni, CPA, has more than 18 years of public accounting and tax startup experience, including 14 years as a CPA serving firms from the Big Four to solo practitioners. He prepared and reviewed returns across partnerships, S corporations, C corporations, exempt organizations, estates and trusts, and as a product manager at Crowe he built K1 Aggregator and C-TRAC, now sold as 990Tracker. At Filed he is VP of Tax Experience, leading customer success, onboarding and solutions engineering.

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